Adun
A multipurpose high performance production molecular simulator

This manual is written for Adun users and is mostly focused on the GUI and introducing general Adun concepts. It currently refers to the current CVS version of Adun although nearly all the information is applicable to Adun 0.81 and 0.82. Here are the current topics which we are slowly filling in. Those in green are complete:

• Adun Data Types
  • Overview
  • Systems
  • Templates
  • Simulations
  • DataSets
  • Viewing Relationships
• The Database
  • Overview
  • The Database Browser
  • Database Operations
  • Exporting Data
  • Importing Data
  • Adding a Database
  • Sharing a Database
• The System Builder
• Creating a System
• Adding Hydrogens
• Simulations
  • Overview
  • The Process Status Table
  • Creating Simulations
  • Running a Simulation
  • Interacting with Simulations
  • Simulation Logs
• The Analyser
  • Overview
  • Applying a Plugin
  • Gnuplot Integration
  • Simulation Reloading
  • External Objects
• Running from the Command Line
  • Overview
  • Template File
  • Linking
  • Command Line Options
  • ResultsConverter
  • The adun Director